Detailed information of Aala_g142.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_002163195.1, 3'-5' ssDNA/RNA exonuclease TatD [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
D0Z9R03'-5' ssDNA/RNA exonuclease TatD OS=Edwardsiella piscicida OX=1263550 GN=tatD PE=3 SV=1
Q9L6M23'-5' ssDNA/RNA exonuclease TatD OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=tatD PE=3 SV=1
B2VG453'-5' ssDNA/RNA exonuclease TatD OS=Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99) OX=465817 GN=tatD PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF01026TatD_DNaseTatD related DNaseDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR032466Homologous_superfamilyMetal-dependent hydrolaseInterproscan
IPR001130Family3'-5' ssDNA/RNA exonuclease TatD-likeInterproscan
IPR050891FamilyTatD-type Metallo-dependent HydrolaseInterproscan
IPR005819FamilyLinker histone H1/H5Interproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR000488DomainDeath domainInterproscan
IPR011029Homologous_superfamilyDeath-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10060TATD FAMILY DEOXYRIBONUCLEASEInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR23227BUCENTAUR RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016788Molecular Functionhydrolase activity, acting on ester bondsInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0008310Molecular Functionsingle-stranded DNA 3'-5' DNA exonuclease activityInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0007165Biological Processsignal transductionInterproscan

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