Gene detail

Detailed information of Aala_g1428.t1 in Alatina alata

Genomic Location: :...
NR annotation: MCP3664820.1, DDE-type integrase/transposase/recombinase [Gammaproteobacteria bacterium]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
A0A0B7P3V8	Transposon Ty4-P Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY4B-P PE=5 SV=2
P0C2J7	Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY4B-H PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF00334	NDK	Nucleoside diphosphate kinase	Domain	Interproscan
PF02140	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan
PF13976	gag_pre-integrs	GAG-pre-integrase domain	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR034907	Domain	Nucleoside diphosphate kinase-like domain	Interproscan
IPR036850	Homologous_superfamily	Nucleoside diphosphate kinase-like domain superfamily	Interproscan
IPR001564	Family	Nucleoside diphosphate kinase	Interproscan
IPR043159	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR000922	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR025724	Domain	GAG-pre-integrase domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR051484	Family	Tensin Phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46161	NUCLEOSIDE DIPHOSPHATE KINASE	Interproscan
PTHR46780	PROTEIN EVA-1	Interproscan
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR47018	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR35450	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR45734	TENSIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004550	Molecular Function	nucleoside diphosphate kinase activity	Interproscan
GO:0006183	Biological Process	GTP biosynthetic process	Interproscan
GO:0006228	Biological Process	UTP biosynthetic process	Interproscan
GO:0006241	Biological Process	CTP biosynthetic process	Interproscan
GO:0003341	Biological Process	cilium movement	Interproscan
GO:0005929	Cellular Component	cilium	Interproscan
GO:1902176	Biological Process	negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005925	Cellular Component	focal adhesion	Interproscan