Detailed information of Aala_g143.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_020613793.1, LIM domain kinase 1-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P53668LIM domain kinase 1 OS=Mus musculus OX=10090 GN=Limk1 PE=1 SV=1
P53667LIM domain kinase 1 OS=Homo sapiens OX=9606 GN=LIMK1 PE=1 SV=3
Q8QFP8LIM domain kinase 1 OS=Gallus gallus OX=9031 GN=LIMK1 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13936HTH_38Helix-turn-helix domainDomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF14893PNMAPNMAFamilyInterproscan
PF07714PK_Tyr_Ser-ThrProtein tyrosine and serine/threonine kinaseDomainInterproscan
PF03221HTH_Tnp_Tc5Tc5 transposase DNA-binding domainDomainInterproscan
PF00628PHDPHD-fingerDomainInterproscan
PF13832zf-HC5HC2H_2PHD-zinc-finger like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR025246DomainTransposase IS30-like HTH domainInterproscan
IPR052338FamilyTransposase_5Interproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR048270DomainParaneoplastic antigen Ma-like, C-terminal domainInterproscan
IPR000719DomainProtein kinase domainInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR017441Binding_siteProtein kinase, ATP binding siteInterproscan
IPR001245DomainSerine-threonine/tyrosine-protein kinase, catalytic domainInterproscan
IPR050940FamilyActin-regulating Serine/Threonine KinaseInterproscan
IPR006600DomainHTH CenpB-type DNA-binding domainInterproscan
IPR050863FamilyCentromere and Transposable Element-Derived ProteinInterproscan
IPR036249Homologous_superfamilyThioredoxin-like superfamilyInterproscan
IPR000889FamilyGlutathione peroxidaseInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR050701FamilyHistone Modification RegulatorInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR034732DomainExtended PHD (ePHD) domainInterproscan
IPR005819FamilyLinker histone H1/H5Interproscan
IPR013087DomainZinc finger C2H2-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23022TRANSPOSABLE ELEMENT-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46485LIM DOMAIN KINASE 1Interproscan
PTHR19303TRANSPOSONInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR11592GLUTATHIONE PEROXIDASEInterproscan
PTHR13793PHD FINGER PROTEINSInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004672Molecular Functionprotein kinase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006468Biological Processprotein phosphorylationInterproscan
GO:0004674Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0030036Biological Processactin cytoskeleton organizationInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0004601Molecular Functionperoxidase activityInterproscan
GO:0006979Biological Processresponse to oxidative stressInterproscan
GO:0004602Molecular Functionglutathione peroxidase activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K27397PHF14; PHD finger protein 14-Chromosome and associated proteinsko03036deepkoala

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