Gene detail

Detailed information of Aala_g1436.t1 in Alatina alata

Genomic Location: :...
NR annotation: ROT63998.1, putative RNA-directed DNA polymerase from mobile element jockey-like [Penaeus vannamei]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P27401	Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) OX=11644 GN=pol PE=3 SV=2
P23074	Pro-Pol polyprotein OS=Simian foamy virus type 1 OX=338478 GN=pol PE=1 SV=3
P14350	Pro-Pol polyprotein OS=Human spumaretrovirus OX=11963 GN=pol PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF01469	Pentapeptide_2	Pentapeptide repeats (8 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR002989	Repeat	Mycobacterial pentapeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46238	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR42908	TRANSLATION ELONGATION FACTOR-RELATED	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0042256	Biological Process	cytosolic ribosome assembly	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan