Detailed information of Aala_g1451.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_046693624.1, microfibril-associated glycoprotein 4-like [Silurus meridionalis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P57756Ficolin-2 OS=Rattus norvegicus OX=10116 GN=Fcn2 PE=2 SV=1
Q15485Ficolin-2 OS=Homo sapiens OX=9606 GN=FCN2 PE=1 SV=2
Q9WTS8Ficolin-1 OS=Rattus norvegicus OX=10116 GN=Fcn1 PE=2 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan
PF03564DUF1759Protein of unknown function (DUF1759)FamilyInterproscan
PF05000RNA_pol_Rpb1_4RNA polymerase Rpb1, domain 4DomainInterproscan
PF04998RNA_pol_Rpb1_5RNA polymerase Rpb1, domain 5DomainInterproscan
PF00082Peptidase_S8Subtilase familyDomainInterproscan
PF14893PNMAPNMAFamilyInterproscan
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF14291DUF4371Domain of unknown function (DUF4371)FamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR005312FamilyProtein of unknown function DUF1759Interproscan
IPR007083DomainRNA polymerase Rpb1, domain 4Interproscan
IPR045867FamilyDNA-directed RNA polymerase, subunit beta-primeInterproscan
IPR038120Homologous_superfamilyRNA polymerase Rpb1, funnel domain superfamilyInterproscan
IPR007081DomainRNA polymerase Rpb1, domain 5Interproscan
IPR023828Active_sitePeptidase S8, subtilisin, Ser-active siteInterproscan
IPR036852Homologous_superfamilyPeptidase S8/S53 domain superfamilyInterproscan
IPR000209DomainPeptidase S8/S53 domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR048270DomainParaneoplastic antigen Ma-like, C-terminal domainInterproscan
IPR000515DomainABC transporter type 1, transmembrane domain MetI-likeInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR040676DomainDomain of unknown function DUF5641Interproscan
IPR006580DomainZinc finger, TTF-typeInterproscan
IPR025398DomainDomain of unknown function DUF4371Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan
PTHR23227BUCENTAUR RELATEDInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR19376DNA-DIRECTED RNA POLYMERASEInterproscan
PTHR42884PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATEDInterproscan
PTHR19963CCHC-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR45749-Interproscan
PTHR46670ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0001054Molecular FunctionRNA polymerase I activityInterproscan
GO:0005736Cellular ComponentRNA polymerase I complexInterproscan
GO:0004252Molecular Functionserine-type endopeptidase activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016485Biological Processprotein processingInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008236Molecular Functionserine-type peptidase activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11111TERF2, TRF2; telomeric repeat-binding factor 2-Signaling proteins-deepkoala
DNA replication proteinsko03032deepkoala

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