Detailed information of Aala_g1463.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAG1671312.1, LINE-1 retrotransposable element ORF2 protein [Nymphon striatum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8IWL3Iron-sulfur cluster co-chaperone protein HscB OS=Homo sapiens OX=9606 GN=HSCB PE=1 SV=3
A0JNC1Phosphatidate cytidylyltransferase 2 OS=Bos taurus OX=9913 GN=CDS2 PE=2 SV=1
Q91XU8Phosphatidate cytidylyltransferase 2 OS=Rattus norvegicus OX=10116 GN=Cds2 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07743HSCB_CHSCB C-terminal oligomerisation domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan
PF14291DUF4371Domain of unknown function (DUF4371)FamilyInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF01148CTP_transf_1Cytidylyltransferase familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009073DomainCo-chaperone HscB, C-terminal oligomerisation domainInterproscan
IPR036386Homologous_superfamilyHscB, C-terminal domain superfamilyInterproscan
IPR004640FamilyCo-chaperone Hsc20Interproscan
IPR052613FamilyLicD transferaseInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR025398DomainDomain of unknown function DUF4371Interproscan
IPR036226Homologous_superfamilyLipoxigenase, C-terminal domain superfamilyInterproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR016720FamilyPhosphatidate cytidylyltransferase, eukaryotaInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14021IRON-SULFUR CLUSTER CO-CHAPERONE PROTEIN HSCBInterproscan
PTHR13627FUKUTIN RELATED PROTEINInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR23227BUCENTAUR RELATEDInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR45749-Interproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan
PTHR13773PHOSPHATIDATE CYTIDYLYLTRANSFERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0051259Biological Processprotein complex oligomerizationInterproscan
GO:0001671Molecular FunctionATPase activator activityInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0044571Biological Process[2Fe-2S] cluster assemblyInterproscan
GO:0051087Molecular Functionprotein-folding chaperone bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0004605Molecular Functionphosphatidate cytidylyltransferase activityInterproscan
GO:0005789Cellular Componentendoplasmic reticulum membraneInterproscan

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