Detailed information of Aala_g1472.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB4008386.1, Retrovirus-related Pol poly from transposon [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P12394Steroid 17-alpha-hydroxylase/17,20 lyase OS=Gallus gallus OX=9031 GN=CYP17A1 PE=2 SV=1
O57525Steroid 17-alpha-hydroxylase/17,20 lyase OS=Rana dybowskii OX=71582 GN=CYP17A1 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00483NTP_transferaseNucleotidyl transferaseFamilyInterproscan
PF00132HexapepBacterial transferase hexapeptide (six repeats)RepeatInterproscan
PF01285TEATEA/ATTS domainDomainInterproscan
PF00067p450Cytochrome P450DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR052160FamilyGypsy Retrotransposon Integrase-likeInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR029044Homologous_superfamilyNucleotide-diphospho-sugar transferasesInterproscan
IPR005835DomainNucleotidyl transferase domainInterproscan
IPR050486FamilyMannose-1-phosphate guanyltransferaseInterproscan
IPR001451RepeatHexapeptide repeatInterproscan
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR000818DomainTEA/ATTS domainInterproscan
IPR050937FamilyTEC1/TEAD Transcription FactorInterproscan
IPR038096Homologous_superfamilyTEA/ATTS domain superfamilyInterproscan
IPR001128FamilyCytochrome P450Interproscan
IPR002401FamilyCytochrome P450, E-class, group IInterproscan
IPR050182FamilyCytochrome P450 family 2Interproscan
IPR036396Homologous_superfamilyCytochrome P450 superfamilyInterproscan
IPR017972Conserved_siteCytochrome P450, conserved siteInterproscan
IPR035901Homologous_superfamilyGIY-YIG endonuclease superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19879TRANSCRIPTION INITIATION FACTOR TFIIDInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR46114APPLE DOMAIN-CONTAINING PROTEINInterproscan
PTHR47266ENDONUCLEASE-RELATEDInterproscan
PTHR22572SUGAR-1-PHOSPHATE GUANYL TRANSFERASEInterproscan
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR11834TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATEDInterproscan
PTHR24300CYTOCHROME P450 508A4-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005669Cellular Componenttranscription factor TFIID complexInterproscan
GO:0006367Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0016251Molecular FunctionRNA polymerase II general transcription initiation factor activityInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0009058Biological Processbiosynthetic processInterproscan
GO:0004475Molecular Functionmannose-1-phosphate guanylyltransferase (GTP) activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006486Biological Processprotein glycosylationInterproscan
GO:0009298Biological ProcessGDP-mannose biosynthetic processInterproscan
GO:0016779Molecular Functionnucleotidyltransferase activityInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0035329Biological Processhippo signalingInterproscan
GO:0048568Biological Processembryonic organ developmentInterproscan
GO:0004497Molecular Functionmonooxygenase activityInterproscan
GO:0005506Molecular Functioniron ion bindingInterproscan
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygenInterproscan
GO:0020037Molecular Functionheme bindingInterproscan
GO:0006082Biological Processorganic acid metabolic processInterproscan
GO:0006805Biological Processxenobiotic metabolic processInterproscan
GO:0016712Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygenInterproscan
GO:0043231Cellular Componentintracellular membrane-bounded organelleInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K21812E5; Alphapapillomavirus protein E5-Transcription factorsko03000deepkoala
Glycosaminoglycan binding proteinsko00536deepkoala
Viral proteinsko03200deepkoala

TOP