Detailed information of Aala_g15.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_027045792.1, nudix hydrolase 24, chloroplastic-like isoform X2 [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8VXZ0Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NUDT20 PE=2 SV=1
P41888Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tnr3 PE=1 SV=1
Q6KC79Nipped-B-like protein OS=Homo sapiens OX=9606 GN=NIPBL PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF07500TFIIS_MTranscription factor S-II (TFIIS), central domainDomainInterproscan
PF08711Med26TFIIS helical bundle-like domainDomainInterproscan
PF03564DUF1759Protein of unknown function (DUF1759)FamilyInterproscan
PF00293NUDIXNUDIX domainDomainInterproscan
PF15916DUF4743Domain of unknown function (DUF4743)FamilyInterproscan
PF12830Nipped-B_CSister chromatid cohesion C-terminusRepeatInterproscan
PF13961DUF4219Domain of unknown function (DUF4219)DomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR036575Homologous_superfamilyTranscription elongation factor S-II, central domain superfamilyInterproscan
IPR003618DomainTranscription elongation factor S-II, central domainInterproscan
IPR035441Homologous_superfamilyTFIIS/LEDGF domain superfamilyInterproscan
IPR017923DomainTranscription factor IIS, N-terminalInterproscan
IPR003617DomainTranscription elongation factor, TFIIS/CRSP70, N-terminal, sub-typeInterproscan
IPR005312FamilyProtein of unknown function DUF1759Interproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR000086DomainNUDIX hydrolase domainInterproscan
IPR015797Homologous_superfamilyNUDIX hydrolase-like domain superfamilyInterproscan
IPR031804DomainDomain of unknown function DUF4743Interproscan
IPR033031FamilyScc2/Nipped-B familyInterproscan
IPR024986DomainSister chromatid cohesion C-terminal domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR025314DomainDomain of unknown function DUF4219Interproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR11477TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEINInterproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR13622THIAMIN PYROPHOSPHOKINASEInterproscan
PTHR21704NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATEDInterproscan
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR47481-Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0044715Molecular Function8-oxo-dGDP phosphatase activityInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0034087Biological Processestablishment of mitotic sister chromatid cohesionInterproscan
GO:0061780Biological Processobsolete mitotic cohesin loadingInterproscan
GO:0071169Biological Processestablishment of protein localization to chromatinInterproscan
GO:0090694Cellular ComponentScc2-Scc4 cohesin loading complexInterproscan
GO:1990414Biological Processreplication-born double-strand break repair via sister chromatid exchangeInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08495GOSR1, GOS1; golgi SNAP receptor complex member 1-Membrane traffickingko04131deepkoala

TOP