Detailed information of Aala_g1525.t1 in Alatina alata

Genomic Location: :...
NR annotation: GFR72204.1, retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 [Elysia marginata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O93209Pro-Pol polyprotein OS=Feline foamy virus OX=53182 GN=pol PE=3 SV=1
Q3U435Matrix metalloproteinase-25 OS=Mus musculus OX=10090 GN=Mmp25 PE=2 SV=1
Q9NPA2Matrix metalloproteinase-25 OS=Homo sapiens OX=9606 GN=MMP25 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03184DDE_1DDE superfamily endonucleaseFamilyInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF14893PNMAPNMAFamilyInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF00413Peptidase_M10MatrixinDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036396Homologous_superfamilyCytochrome P450 superfamilyInterproscan
IPR004875DomainDDE superfamily endonuclease domainInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR051320FamilyViral Replication and Maturation PolyproteinInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR048270DomainParaneoplastic antigen Ma-like, C-terminal domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001818DomainPeptidase M10, metallopeptidaseInterproscan
IPR021190FamilyPeptidase M10AInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR051245FamilyeIF5-mimic translation initiation regulatorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33064POL PROTEINInterproscan
PTHR33198ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR46954C2H2-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10201MATRIX METALLOPROTEINASEInterproscan
PTHR45749-Interproscan
PTHR14208BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004497Molecular Functionmonooxygenase activityInterproscan
GO:0005506Molecular Functioniron ion bindingInterproscan
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygenInterproscan
GO:0020037Molecular Functionheme bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0030574Biological Processcollagen catabolic processInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02417fliN; flagellar motor switch protein FliN-Bacterial motility proteinsko02035deepkoala

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