Detailed information of Aala_g155.t1 in Alatina alata

Genomic Location: :...
NR annotation: WBB44924.1, reverse transcriptase [Chrysogorgia stellata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q2HIK4Prefoldin subunit 6 OS=Arabidopsis thaliana OX=3702 GN=PFD6 PE=1 SV=1
Q17Q89Prefoldin subunit 6 OS=Bos taurus OX=9913 GN=PFDN6 PE=2 SV=1
Q03958Prefoldin subunit 6 OS=Mus musculus OX=10090 GN=Pfdn6 PE=1 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01920Prefoldin_2Prefoldin subunitCoiled-coilInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF13912zf-C2H2_6C2H2-type zinc fingerDomainInterproscan
PF05986ADAMTS_spacer1ADAM-TS Spacer 1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009053Homologous_superfamilyPrefoldinInterproscan
IPR002777FamilyPrefoldin beta-likeInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR050331FamilyZinc fingerInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR005819FamilyLinker histone H1/H5Interproscan
IPR050439FamilyADAMTS and ADAMTS-likeInterproscan
IPR010294DomainADAMTS/ADAMTS-like, Spacer 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21431PREFOLDIN SUBUNIT 6Interproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR16515PR DOMAIN ZINC FINGER PROTEINInterproscan
PTHR13723ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006457Biological Processprotein foldingInterproscan
GO:0016272Cellular Componentprefoldin complexInterproscan
GO:0051087Molecular Functionprotein-folding chaperone bindingInterproscan
GO:0051131Biological Processchaperone-mediated protein complex assemblyInterproscan
GO:0051082Molecular Functionunfolded protein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13836CSP; circumsporozoite protein-Glycosaminoglycan binding proteinsko00536deepkoala

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