Detailed information of Aala_g1553.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_042885955.1, craniofacial development protein 2-like [Penaeus japonicus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P17863Transforming protein Ski OS=Avian erythroblastosis virus (strain Sloan-Kettering) OX=11862 GN=V-SKI PE=1 SV=1
P49140Ski oncogene OS=Gallus gallus OX=9031 GN=SKI PE=1 SV=1
Q60698Ski oncogene OS=Mus musculus OX=10090 GN=Ski PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF02437Ski_SnoSKI/SNO/DAC familyFamilyInterproscan
PF08782c-SKI_SMAD_bindc-SKI Smad4 binding domainDomainInterproscan
PF13359DDE_Tnp_4DDE superfamily endonucleaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF18701DUF5641Family of unknown function (DUF5641)DomainInterproscan
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan
PF00089TrypsinTrypsinDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR003380DomainSKI/SNO/DAC domainInterproscan
IPR023216FamilyTranscription regulator SKI/SnoNInterproscan
IPR010919Homologous_superfamilySAND-like domain superfamilyInterproscan
IPR037000Homologous_superfamilySki-like, DNA-binding domain superfamilyInterproscan
IPR014890Domainc-SKI SMAD4-binding domainInterproscan
IPR009061Homologous_superfamilyPutative DNA-binding domain superfamilyInterproscan
IPR027806DomainHarbinger transposase-derived nuclease domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR040676DomainDomain of unknown function DUF5641Interproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR042335FamilyAnkyrin repeat domain-containing protein 53Interproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR001254DomainSerine proteases, trypsin domainInterproscan
IPR043504Homologous_superfamilyPeptidase S1, PA clan, chymotrypsin-like foldInterproscan
IPR050127FamilySerine Proteases (Peptidase S1 Family)Interproscan
IPR009003Homologous_superfamilyPeptidase S1, PA clanInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan
PTHR10005SKI ONCOGENE-RELATEDInterproscan
PTHR22930UNCHARACTERIZEDInterproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR33395TRANSCRIPTASE, PUTATIVE-RELATED-RELATEDInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR24160ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 53Interproscan
PTHR23227BUCENTAUR RELATEDInterproscan
PTHR24264TRYPSIN-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0030514Biological Processnegative regulation of BMP signaling pathwayInterproscan
GO:0046332Molecular FunctionSMAD bindingInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0007508Biological Processlarval heart developmentInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0061343Biological Processcell adhesion involved in heart morphogenesisInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000922Cellular Componentspindle poleInterproscan
GO:0007080Biological Processmitotic metaphase chromosome alignmentInterproscan
GO:0031116Biological Processpositive regulation of microtubule polymerizationInterproscan
GO:0060236Biological Processregulation of mitotic spindle organizationInterproscan
GO:1902412Biological Processregulation of mitotic cytokinesisInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0004252Molecular Functionserine-type endopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23222HARBI1; nuclease HARBI1EC:3.1.-.-
TGF-beta signaling pathwayko04350deepkoala
Chromosome and associated proteinsko03036deepkoala

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