Detailed information of Aala_g1559.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_032232313.1, class E basic helix-loop-helix protein 22 isoform X2 [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P79766Neurogenic differentiation factor 4 OS=Gallus gallus OX=9031 GN=NEUROD4 PE=2 SV=1
Q9HD90Neurogenic differentiation factor 4 OS=Homo sapiens OX=9606 GN=NEUROD4 PE=1 SV=2
P79920Neurogenic differentiation factor 4 OS=Xenopus laevis OX=8355 GN=neurod4 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilybHLH

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00779BTKBTK motifMotifInterproscan
PF00169PHPH domainDomainInterproscan
PF00010HLHHelix-loop-helix DNA-binding domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF05960DUF885Bacterial protein of unknown function (DUF885)FamilyInterproscan
PF13499EF-hand_7EF-hand domain pairDomainInterproscan
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001562Conserved_siteZinc finger, Btk motifInterproscan
IPR001849DomainPleckstrin homology domainInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR051707FamilyPhosphoinositide-Interacting Signal Transduction RegulatorsInterproscan
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR050359FamilyBasic helix-loop-helix transcription factorsInterproscan
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR010281FamilyProtein of unknown function DUF885Interproscan
IPR002048DomainEF-hand domainInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR050145FamilyCalmodulin and Centrin Calcium-Binding FamiliesInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR001969Active_siteAspartic peptidase, active siteInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14336TANDEM PH DOMAIN CONTAINING PROTEINInterproscan
PTHR19290BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATEDInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR33361GLR0591 PROTEINInterproscan
PTHR23050CALCIUM BINDING PROTEINInterproscan
PTHR46238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0035556Biological Processintracellular signal transductionInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0007423Biological Processsensory organ developmentInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0061564Biological Processaxon developmentInterproscan
GO:0070888Molecular FunctionE-box bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0004190Molecular Functionaspartic-type endopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K27179ODAD5, CLXN, EFCAB1; outer dynein arm-docking complex subunit 5-Cilium and associated proteinsko03037deepkoala

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