Gene detail

Detailed information of Aala_g162.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_047484939.1, uncharacterized protein LOC125036390 [Penaeus chinensis]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q06066	Y-box-binding protein 1 OS=Gallus gallus OX=9031 GN=YBX1 PE=2 SV=1
P62960	Y-box-binding protein 1 OS=Mus musculus OX=10090 GN=Ybx1 PE=1 SV=3
P62961	Y-box-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Ybx1 PE=2 SV=3

Gene family	Subfamily
Transcription Factors Family	CSD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13359	DDE_Tnp_4	DDE superfamily endonuclease	Domain	Interproscan
PF18701	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan
PF05699	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF14291	DUF4371	Domain of unknown function (DUF4371)	Family	Interproscan
PF13862	BCCIP	BCCIP	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027806	Domain	Harbinger transposase-derived nuclease domain	Interproscan
IPR026103	Family	Harbinger transposase-derived nuclease, animal	Interproscan
IPR040676	Domain	Domain of unknown function DUF5641	Interproscan
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan
IPR050181	Family	Cold shock domain-containing protein	Interproscan
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR008906	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR025398	Domain	Domain of unknown function DUF4371	Interproscan
IPR025602	Family	BCP1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35450	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR22930	UNCHARACTERIZED	Interproscan
PTHR22955	RETROTRANSPOSON	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	Interproscan
PTHR45749	-	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23222	HARBI1; nuclease HARBI1	EC:3.1.-.-	Chromosome and associated proteins	ko03036	deepkoala