Gene detail

Detailed information of Aala_g1637.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_030836904.1, uncharacterized protein LOC105440699 [Strongylocentrotus purpuratus]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
O00370	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1
P08548	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1
P21328	RNA-directed DNA polymerase from mobile element jockey OS=Drosophila melanogaster OX=7227 GN=pol PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF13936	HTH_38	Helix-turn-helix domain	Domain	Interproscan
PF01498	HTH_Tnp_Tc3_2	Transposase	Family	Interproscan
PF13358	DDE_3	DDE superfamily endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR025246	Domain	Transposase IS30-like HTH domain	Interproscan
IPR002492	Domain	Transposase, Tc1-like	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR038717	Domain	Tc1-like transposase, DDE domain	Interproscan
IPR047655	Family	Transposase IS630-like	Interproscan
IPR052338	Family	Transposase_5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR23022	TRANSPOSABLE ELEMENT-RELATED	Interproscan
PTHR47018	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006313	Biological Process	DNA transposition	Interproscan