Gene detail

Detailed information of Aala_g1647.t1 in Alatina alata

Genomic Location: :...
NR annotation: ROT63998.1, putative RNA-directed DNA polymerase from mobile element jockey-like [Penaeus vannamei]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q6PGW3	Armadillo-like helical domain-containing protein 3 OS=Danio rerio OX=7955 GN=armh3 PE=2 SV=2
Q5T2E6	Armadillo-like helical domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ARMH3 PE=1 SV=1
Q6PD19	Armadillo-like helical domain-containing protein 3 OS=Mus musculus OX=10090 GN=Armh3 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF08427	ARMH3_C	Armadillo-like helical domain-containing protein 3, C-terminal	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF03564	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan
PF05585	DUF1758	Putative peptidase (DUF1758)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR039868	Family	Armadillo-like helical domain-containing protein 3-like	Interproscan
IPR013636	Domain	Armadillo-like helical domain-containing protein 3, C-terminal	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR050149	Family	Collagen superfamily	Interproscan
IPR005312	Family	Protein of unknown function DUF1759	Interproscan
IPR008737	Domain	Peptidase aspartic, putative	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043159	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46238	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR13608	UNCHARACTERIZED	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR24023	COLLAGEN ALPHA	Interproscan
PTHR47331	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18138	acrB, mexB, adeJ, smeE, mtrD, cmeB; multidrug efflux pump	-	Antimicrobial resistance genes	ko01504	deepkoala