Detailed information of Aala_g17.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB4007950.1, structural maintenance of chromosomes 5-like, partial [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8IY18Structural maintenance of chromosomes protein 5 OS=Homo sapiens OX=9606 GN=SMC5 PE=1 SV=2
Q8CG46Structural maintenance of chromosomes protein 5 OS=Mus musculus OX=10090 GN=Smc5 PE=1 SV=1
Q802R9Structural maintenance of chromosomes protein 5 OS=Takifugu rubripes OX=31033 GN=smc5 PE=2 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01212Beta_elim_lyaseBeta-eliminating lyaseDomainInterproscan
PF16752TBCC_NTubulin-specific chaperone C N-terminal domainDomainInterproscan
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015424Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR015421Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR001597DomainAromatic amino acid beta-eliminating lyase/threonine aldolaseInterproscan
IPR036188Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR029062Homologous_superfamilyClass I glutamine amidotransferase-likeInterproscan
IPR015527FamilyPeptidase C26, gamma-glutamyl hydrolaseInterproscan
IPR027131FamilyStructural maintenance of chromosomes protein 5Interproscan
IPR027267Homologous_superfamilyAH/BAR domain superfamilyInterproscan
IPR038397Homologous_superfamilyTBCC, N-terminal domain superfamilyInterproscan
IPR031925DomainTubulin-specific chaperone C, N-terminalInterproscan
IPR027684FamilyTubulin-specific chaperone CInterproscan
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR32325BETA-ELIMINATING LYASE-LIKE PROTEIN-RELATEDInterproscan
PTHR11315PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASEInterproscan
PTHR45916STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5Interproscan
PTHR15139TUBULIN FOLDING COFACTOR CInterproscan
PTHR35362ANK_REP_REGION DOMAIN-CONTAINING PROTEINInterproscan
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR37984PROTEIN CBG26694Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006520Biological Processamino acid metabolic processInterproscan
GO:0016829Molecular Functionlyase activityInterproscan
GO:0005773Cellular ComponentvacuoleInterproscan
GO:0008242Molecular Functionomega peptidase activityInterproscan
GO:0034722Molecular Functiongamma-glutamyl-peptidase activityInterproscan
GO:0046900Biological Processtetrahydrofolylpolyglutamate metabolic processInterproscan
GO:0000724Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0030915Cellular ComponentSmc5-Smc6 complexInterproscan
GO:0015631Molecular Functiontubulin bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006457Biological Processprotein foldingInterproscan
GO:0007021Biological Processtubulin complex assemblyInterproscan
GO:0007023Biological Processpost-chaperonin tubulin folding pathwayInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

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