Gene detail

Detailed information of Aala_g1701.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_047123799.1, filamin-B [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q9VEN1	Filamin-A OS=Drosophila melanogaster OX=7227 GN=cher PE=1 SV=2
Q7ZVN5	Signal recognition particle subunit SRP54 OS=Danio rerio OX=7955 GN=srp54 PE=2 SV=1
Q2T9U1	Signal recognition particle subunit SRP54 OS=Bos taurus OX=9913 GN=SRP54 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07727	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13472	Lipase_GDSL_2	GDSL-like Lipase/Acylhydrolase family	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF13520	AA_permease_2	Amino acid permease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR013103	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR052229	Family	Collagen VI and Biomineralization Protein PIF	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR052560	Family	RNA-directed DNA polymerase, mobile element	Interproscan
IPR036514	Homologous_superfamily	SGNH hydrolase superfamily	Interproscan
IPR051532	Family	Diverse Ester Hydrolysis Enzymes	Interproscan
IPR013830	Domain	SGNH hydrolase-type esterase domain	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR044801	Family	Filamin family	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR036891	Homologous_superfamily	Signal recognition particle, SRP54 subunit, M-domain superfamily	Interproscan
IPR022941	Family	Signal recognition particle, SRP54 subunit	Interproscan
IPR002293	Family	Amino acid/polyamine transporter I	Interproscan
IPR050598	Family	Cellular Amino Acid Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR22588	UNCHARACTERIZED	Interproscan
PTHR33198	ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR36688	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR30383	THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1	Interproscan
PTHR38537	JITTERBUG, ISOFORM N	Interproscan
PTHR11564	SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54	Interproscan
PTHR11785	AMINO ACID TRANSPORTER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0004622	Molecular Function	lysophospholipase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0006614	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0008312	Molecular Function	7S RNA binding	Interproscan
GO:0048500	Cellular Component	signal recognition particle	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005786	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006616	Biological Process	SRP-dependent cotranslational protein targeting to membrane, translocation	Interproscan
GO:0030942	Molecular Function	endoplasmic reticulum signal peptide binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0003333	Biological Process	amino acid transmembrane transport	Interproscan
GO:0015179	Molecular Function	L-amino acid transmembrane transporter activity	Interproscan