Detailed information of Aala_g1718.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAF2895864.1, hypothetical protein ILUMI_10312 [Ignelater luminosus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O75643U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens OX=9606 GN=SNRNP200 PE=1 SV=2
Q6P4T2U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Mus musculus OX=10090 GN=Snrnp200 PE=1 SV=1
F1LNJ2U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Rattus norvegicus OX=10116 GN=Snrnp200 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF02889Sec63Sec63 Brl domainFamilyInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF14214Helitron_like_NHelitron helicase-like domain at N-terminusFamilyInterproscan
PF01034SyndecanSyndecan domainFamilyInterproscan
PF00685Sulfotransfer_1Sulfotransferase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR004179DomainSec63 domainInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR025476DomainHelitron helicase-like domainInterproscan
IPR001050FamilySyndecanInterproscan
IPR027789DomainSyndecan/Neurexin domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000863DomainSulfotransferase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47481-Interproscan
PTHR24075SEC63 DOMAIN-CONTAININGInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR45786DNA BINDING PROTEIN-LIKEInterproscan
PTHR10915SYNDECANInterproscan
PTHR11783SULFOTRANSFERASE SULTInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0000388Biological Processspliceosome conformational change to release U4 (or U4atac) and U1 (or U11)Interproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0009986Cellular Componentcell surfaceInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016477Biological Processcell migrationInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008146Molecular Functionsulfotransferase activityInterproscan
GO:0051923Biological ProcesssulfationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K16336SDC2, CD362; syndecan 2-Proteoglycansko00535deepkoala

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