Gene detail

Detailed information of Aala_g1765.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB3995720.1, Retrovirus-related Pol poly from transposon TNT 1-94 [Paramuricea clavata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P04146	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3
Q9ZT94	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF13976	gag_pre-integrs	GAG-pre-integrase domain	Domain	Interproscan
PF07727	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF02945	Endonuclease_7	Recombination endonuclease VII	Domain	Interproscan
PF18658	zf-C2H2_12	Spin-doc zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000515	Domain	ABC transporter type 1, transmembrane domain MetI-like	Interproscan
IPR000366	Family	GPCR fungal pheromone mating factor, STE2	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR025724	Domain	GAG-pre-integrase domain	Interproscan
IPR013103	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038563	Homologous_superfamily	Recombination endonuclease VII superfamily	Interproscan
IPR004211	Family	Recombination endonuclease VII	Interproscan
IPR044925	Homologous_superfamily	His-Me finger superfamily	Interproscan
IPR040647	Domain	SPIN-DOC-like, zinc-finger	Interproscan
IPR026630	Family	EPM2A-interacting protein 1/ZBED8-like	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR31511	PROTEIN CBG23764	Interproscan
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46238	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR47018	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR46114	APPLE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR45913	EPM2A-INTERACTING PROTEIN 1	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0004932	Molecular Function	mating-type factor pheromone receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan