Gene detail

Detailed information of Aala_g1767.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAH3032310.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q6H874	DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0636300 PE=2 SV=1
Q10PV9	DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0219700 PE=2 SV=1
Q8W4E1	DEAD-box ATP-dependent RNA helicase 47, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH47 PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	PC4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03915	AIP3	Actin interacting protein 3	Family	Interproscan
PF07701	HNOBA	Heme NO binding associated	Domain	Interproscan
PF03564	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan
PF02179	BAG	BAG domain	Family	Interproscan
PF07727	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF00052	Laminin_B	Laminin B (Domain IV)	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF02229	PC4	Transcriptional Coactivator p15 (PC4)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051825	Family	SRC Kinase Signaling Inhibitor	Interproscan
IPR022782	Domain	Actin interacting protein 3-like, C-terminal	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR011645	Domain	Haem NO binding associated	Interproscan
IPR005312	Family	Protein of unknown function DUF1759	Interproscan
IPR039773	Family	Molecular chaperone regulator BAG	Interproscan
IPR003103	Domain	BAG domain	Interproscan
IPR036533	Homologous_superfamily	BAG domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR013103	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR000034	Domain	Laminin IV	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR003173	Domain	Transcriptional coactivator p15 (PC4), C-terminal	Interproscan
IPR009044	Homologous_superfamily	ssDNA-binding transcriptional regulator	Interproscan
IPR045125	Family	RNA polymerase II transcriptional coactivator Sub1/Tcp4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22741	P140CAP/SNIP-RELATED	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR47331	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR12329	BCL2-ASSOCIATED ATHANOGENE	Interproscan
PTHR21523	UNCHARACTERIZED	Interproscan
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR47960	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	Interproscan
PTHR13215	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0004383	Molecular Function	guanylate cyclase activity	Interproscan
GO:0006182	Biological Process	cGMP biosynthetic process	Interproscan
GO:0000774	Molecular Function	adenyl-nucleotide exchange factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0050821	Biological Process	protein stabilization	Interproscan
GO:0051087	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0060261	Biological Process	positive regulation of transcription initiation by RNA polymerase II	Interproscan