Detailed information of Aala_g1779.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAF3393556.1, unnamed protein product [Rotaria socialis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q03278Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis OX=7425 PE=4 SV=2
P23050p55-v-Fos-transforming protein OS=Avian retrovirus NK24 OX=11875 GN=V-FOS PE=3 SV=1
P11939Protein c-Fos OS=Gallus gallus OX=9031 GN=FOS PE=1 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2
Transcription Factors FamilyTF_bZIP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF00170bZIP_1bZIP transcription factorCoiled-coilInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF20049DUF6451Domain of unknown function (DUF6451)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR004827DomainBasic-leucine zipper domainInterproscan
IPR000837FamilyAP-1 transcription factorInterproscan
IPR046347Homologous_superfamilyBasic-leucine zipper domain superfamilyInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR045609DomainDomain of unknown function DUF6451Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR48174DUF946 FAMILY PROTEINInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR23351FOS TRANSCRIPTION FACTOR-RELATEDInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

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