Detailed information of Aala_g1780.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAH25437.1, HyFMR1 protein [Hydractinia echinata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P51113Fragile X messenger ribonucleoprotein 1 homolog A OS=Xenopus laevis OX=8355 GN=fmr1-a PE=1 SV=1
Q6GLC9Fragile X messenger ribonucleoprotein 1 homolog OS=Xenopus tropicalis OX=8364 GN=fmr1 PE=2 SV=1
P51116RNA-binding protein FXR2 OS=Homo sapiens OX=9606 GN=FXR2 PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17904KH_9FMRP KH0 domainDomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF03184DDE_1DDE superfamily endonucleaseFamilyInterproscan
PF03221HTH_Tnp_Tc5Tc5 transposase DNA-binding domainDomainInterproscan
PF01728FtsJFtsJ-like methyltransferaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036612Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR040472DomainSynaptic functional regulator FMRP, KH0 domainInterproscan
IPR040148FamilyFragile X messenger ribonucleoprotein 1Interproscan
IPR011527DomainABC transporter type 1, transmembrane domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR051179FamilyMultifunctional WD repeat-containing proteinInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR052510FamilyOomycete RxLR EffectorInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR006600DomainHTH CenpB-type DNA-binding domainInterproscan
IPR004875DomainDDE superfamily endonuclease domainInterproscan
IPR050863FamilyCentromere and Transposable Element-Derived ProteinInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR050082FamilyRibosomal RNA large subunit methyltransferase RlmEInterproscan
IPR002877DomainRibosomal RNA methyltransferase, FtsJ domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR052160FamilyGypsy Retrotransposon Integrase-likeInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR036188Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10603FRAGILE X MENTAL RETARDATION SYNDROME-RELATED PROTEINInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR19857MITOCHONDRIAL DIVISION PROTEIN 1-RELATEDInterproscan
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR19303TRANSPOSONInterproscan
PTHR10920RIBOSOMAL RNA METHYLTRANSFERASEInterproscan
PTHR47266ENDONUCLEASE-RELATEDInterproscan
PTHR43073DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)]Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0003730Molecular FunctionmRNA 3'-UTR bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005844Cellular Componentobsolete polysomeInterproscan
GO:0006417Biological Processregulation of translationInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0017148Biological Processnegative regulation of translationInterproscan
GO:0036464Cellular Componentcytoplasmic ribonucleoprotein granuleInterproscan
GO:0042803Molecular Functionprotein homodimerization activityInterproscan
GO:0043488Biological Processregulation of mRNA stabilityInterproscan
GO:0045182Molecular Functiontranslation regulator activityInterproscan
GO:0045727Biological Processpositive regulation of translationInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0140359Molecular FunctionABC-type transporter activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0001510Biological ProcessRNA methylationInterproscan
GO:0002181Biological Processcytoplasmic translationInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008173Molecular FunctionRNA methyltransferase activityInterproscan
GO:0008175Molecular FunctiontRNA methyltransferase activityInterproscan
GO:0030488Biological ProcesstRNA methylationInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0032259Biological ProcessmethylationInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0002058Molecular Functionuracil bindingInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006210Biological Processthymine catabolic processInterproscan
GO:0006212Biological Processuracil catabolic processInterproscan
GO:0017113Molecular Functiondihydropyrimidine dehydrogenase (NADP+) activityInterproscan
GO:0050661Molecular FunctionNADP bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23696GRB14; growth factor receptor-bound protein 14-Domain-containing proteins not elsewhere classifiedko04990deepkoala
Domain-containing proteins not elsewhere classifiedko04990deepkoala

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