Gene detail

Detailed information of Aala_g1790.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_031575304.1, TNF receptor-associated factor 3-like [Actinia tenebrosa]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P56389	Cytidine deaminase OS=Mus musculus OX=10090 GN=Cda PE=1 SV=2
P32320	Cytidine deaminase OS=Homo sapiens OX=9606 GN=CDA PE=1 SV=2
Q9S3M0	Cytidine deaminase OS=Sporosarcina psychrophila OX=1476 GN=cdd PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04505	CD225	Interferon-induced transmembrane protein	Family	Interproscan
PF04427	Brix	Brix domain	Domain	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF00383	dCMP_cyt_deam_1	Cytidine and deoxycytidylate deaminase zinc-binding region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007593	Family	CD225/Dispanin family	Interproscan
IPR007109	Domain	Brix domain	Interproscan
IPR026532	Family	Ribosome biogenesis protein BRX1	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR002125	Domain	Cytidine and deoxycytidylate deaminase domain	Interproscan
IPR016192	Binding_site	APOBEC/CMP deaminase, zinc-binding	Interproscan
IPR016193	Homologous_superfamily	Cytidine deaminase-like	Interproscan
IPR050202	Family	Cytidine and Deoxycytidylate Deaminase	Interproscan
IPR006262	Family	Cytidine deaminase, homotetrameric	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13634	RIBOSOME BIOGENESIS PROTEIN BRIX	Interproscan
PTHR24399	ZINC FINGER AND BTB DOMAIN-CONTAINING	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR47272	DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR11644	CYTIDINE DEAMINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0000027	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001227	Molecular Function	DNA-binding transcription repressor activity, RNA polymerase II-specific	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004126	Molecular Function	cytidine deaminase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0009972	Biological Process	cytidine deamination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Drug metabolism - other enzymes	ko00983	deepkoala
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala