Detailed information of Aala_g1796.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB4018431.1, Transposon Ty3-G Gag-Pol poly [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P56399Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus OX=10090 GN=Usp5 PE=1 SV=1
P45974Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens OX=9606 GN=USP5 PE=1 SV=2
Q5R407Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii OX=9601 GN=UBP5 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Alpha-Helix|UBA

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF00627UBAUBA/TS-N domainDomainInterproscan
PF13450NAD_binding_8NAD(P)-binding Rossmann-like domainDomainInterproscan
PF07156Prenylcys_lyasePrenylcysteine lyaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004244FamilyTransposase, L1Interproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR015940DomainUbiquitin-associated domainInterproscan
IPR009060Homologous_superfamilyUBA-like superfamilyInterproscan
IPR010795DomainPrenylcysteine lyaseInterproscan
IPR017046FamilyPrenylcysteine oxidaseInterproscan
IPR036188Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11505L1 TRANSPOSABLE ELEMENT-RELATEDInterproscan
PTHR23227BUCENTAUR RELATEDInterproscan
PTHR15944FARNESYLCYSTEINE LYASEInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR46880RAS-ASSOCIATING DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003727Molecular Functionsingle-stranded RNA bindingInterproscan
GO:0032197Biological ProcessretrotranspositionInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016670Molecular Functionoxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptorInterproscan
GO:0030328Biological Processprenylcysteine catabolic processInterproscan
GO:0001735Molecular Functionprenylcysteine oxidase activityInterproscan
GO:0030327Biological Processprenylated protein catabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K16348ecnB; entericidin B-Transportersko02000deepkoala

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