Gene detail

Detailed information of Aala_g1812.t1 in Alatina alata

Genomic Location: :...
NR annotation: WP_267899613.1, reverse transcriptase family protein, partial [Alcanivorax profundi]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P0CV25	Secreted RxLR effector protein 78 OS=Plasmopara viticola OX=143451 GN=RXLR78 PE=3 SV=1
Q8VIJ6	Splicing factor, proline- and glutamine-rich OS=Mus musculus OX=10090 GN=Sfpq PE=1 SV=1
P23246	Splicing factor, proline- and glutamine-rich OS=Homo sapiens OX=9606 GN=SFPQ PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF12781	AAA_9	ATP-binding dynein motor region	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026983	Family	Dynein heavy chain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035706	Domain	Dynein heavy chain, ATP-binding dynein motor region	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37445	PROTEIN CBG24663	Interproscan
PTHR47481	-	Interproscan
PTHR46961	DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR23189	RNA RECOGNITION MOTIF-CONTAINING	Interproscan
PTHR48209	AGL056WP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0030286	Cellular Component	dynein complex	Interproscan
GO:0045505	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23731	CCDC103; coiled-coil domain-containing protein 103	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala