Detailed information of Aala_g1829.t1 in Alatina alata

Genomic Location: :...
NR annotation: MCP3891066.1, DDE-type integrase/transposase/recombinase [Desulfobulbaceae bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7LHG5Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2
Q99315Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3
P04323Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00023AnkAnkyrin repeatRepeatInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF14291DUF4371Domain of unknown function (DUF4371)FamilyInterproscan
PF05485THAPTHAP domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF15511CENP-T_CCentromere kinetochore component CENP-T histone foldDomainInterproscan
PF03747ADP_ribosyl_GHADP-ribosylglycohydrolaseFamilyInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR052076FamilyTransient receptor potential cation channelInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR025398DomainDomain of unknown function DUF4371Interproscan
IPR004244FamilyTransposase, L1Interproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR001951FamilyHistone H4Interproscan
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR035425DomainCENP-T/Histone H4, histone foldInterproscan
IPR019809Conserved_siteHistone H4, conserved siteInterproscan
IPR004823DomainTATA box binding protein associated factor (TAF), histone-like fold domainInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR036705Homologous_superfamilyADP-ribosylation/Crystallin J1 superfamilyInterproscan
IPR005502FamilyADP-ribosylation/Crystallin J1Interproscan
IPR050792FamilyADP-ribosylglycohydrolaseInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR002156DomainRibonuclease H domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR052338FamilyTransposase_5Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47143TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESSInterproscan
PTHR45749-Interproscan
PTHR11505L1 TRANSPOSABLE ELEMENT-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10484HISTONE H4Interproscan
PTHR16222ADP-RIBOSYLGLYCOHYDROLASEInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR23022TRANSPOSABLE ELEMENT-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003727Molecular Functionsingle-stranded RNA bindingInterproscan
GO:0032197Biological ProcessretrotranspositionInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activityInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11254H4; histone H4-Chromosome and associated proteinsko03036deepkoala

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