Detailed information of Aala_g1831.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_002159462.2, non-canonical poly(A) RNA polymerase protein Trf4-1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8NDF8Terminal nucleotidyltransferase 4B OS=Homo sapiens OX=9606 GN=TENT4B PE=1 SV=2
Q68ED3Terminal nucleotidyltransferase 4B OS=Mus musculus OX=10090 GN=Tent4b PE=1 SV=2
Q6PB75Terminal nucleotidyltransferase 4A OS=Mus musculus OX=10090 GN=Tent4a PE=2 SV=3
Gene familySubfamily
Transcription Factors FamilyHTH

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00125HistoneCore histone H2A/H2B/H3/H4DomainInterproscan
PF16211Histone_H2A_CC-terminus of histone H2AFamilyInterproscan
PF01909NTP_transf_2Nucleotidyltransferase domainDomainInterproscan
PF13843DDE_Tnp_1_7Transposase IS4DomainInterproscan
PF05225HTH_psqhelix-turn-helix, Psq domainDomainInterproscan
PF03184DDE_1DDE superfamily endonucleaseFamilyInterproscan
PF13424TPR_12Tetratricopeptide repeatRepeatInterproscan
PF03173CHB_HEXPutative carbohydrate binding domainDomainInterproscan
PF00728Glyco_hydro_20Glycosyl hydrolase family 20, catalytic domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR002119FamilyHistone H2AInterproscan
IPR007125DomainHistone H2A/H2B/H3Interproscan
IPR032458Conserved_siteHistone H2A conserved siteInterproscan
IPR032454DomainHistone H2A, C-terminal domainInterproscan
IPR045862FamilyNucleotidyltransferase Trf4-likeInterproscan
IPR043519Homologous_superfamilyNucleotidyltransferase superfamilyInterproscan
IPR002934DomainPolymerase, nucleotidyl transferase domainInterproscan
IPR029526DomainPiggyBac transposable element-derived proteinInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR007889DomainDNA binding HTH domain, Psq-typeInterproscan
IPR004875DomainDDE superfamily endonuclease domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR050863FamilyCentromere and Transposable Element-Derived ProteinInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR051787FamilyEffector and Ciliary Development-Associated ProteinInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR029018Homologous_superfamilyBeta-hexosaminidase-like, domain 2Interproscan
IPR012291Homologous_superfamilyCBM2, carbohydrate-binding domain superfamilyInterproscan
IPR008965Homologous_superfamilyCBM2/CBM3, carbohydrate-binding domain superfamilyInterproscan
IPR004866DomainChitobiase/beta-hexosaminidases, N-terminal domainInterproscan
IPR017853Homologous_superfamilyGlycoside hydrolase superfamilyInterproscan
IPR025705FamilyBeta-hexosaminidaseInterproscan
IPR015883DomainGlycoside hydrolase family 20, catalytic domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23430HISTONE H2AInterproscan
PTHR23092POLY(A) RNA POLYMERASEInterproscan
PTHR19303TRANSPOSONInterproscan
PTHR45641TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)Interproscan
PTHR22600BETA-HEXOSAMINIDASEInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0000790Cellular ComponentchromatinInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006342Biological Processheterochromatin formationInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0004652Molecular Functionobsolete polynucleotide adenylyltransferase activityInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0031123Biological ProcessRNA 3'-end processingInterproscan
GO:0031499Cellular ComponentTRAMP complexInterproscan
GO:1990817Molecular Functionpoly(A) RNA polymerase activityInterproscan
GO:0016779Molecular Functionnucleotidyltransferase activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0001822Biological Processkidney developmentInterproscan
GO:0007368Biological Processdetermination of left/right symmetryInterproscan
GO:0060026Biological Processconvergent extensionInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compoundsInterproscan
GO:0030247Molecular Functionpolysaccharide bindingInterproscan
GO:0030246Molecular Functioncarbohydrate bindingInterproscan
GO:0004563Molecular Functionbeta-N-acetylhexosaminidase activityInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0030203Biological Processglycosaminoglycan metabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11251H2A; histone H2A-Others-deepkoala
Exosomeko04147deepkoala

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