Detailed information of Aala_g1836.t1 in Alatina alata

Genomic Location: :...
NR annotation: MCH9665805.1, hypothetical protein [Gammaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O02751Craniofacial development protein 2 OS=Bos taurus OX=9913 GN=CFDP2 PE=1 SV=2
Q588U8Craniofacial development protein 2 OS=Tragulus javanicus OX=9849 GN=CFDP2 PE=2 SV=1
Q9D7B6Isobutyryl-CoA dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Acad8 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14291DUF4371Domain of unknown function (DUF4371)FamilyInterproscan
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF14529Exo_endo_phos_2Endonuclease-reverse transcriptase DomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF03467Smg4_UPF3Smg-4/UPF3 familyFamilyInterproscan
PF00441Acyl-CoA_dh_1Acyl-CoA dehydrogenase, C-terminal domainDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan
PF00125HistoneCore histone H2A/H2B/H3/H4DomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR025398DomainDomain of unknown function DUF4371Interproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR039722FamilyNonsense-mediated mRNA decay protein 3Interproscan
IPR005120DomainUPF3 domainInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR052547FamilyMitochondrial Isobutyryl-CoA DehydrogenaseInterproscan
IPR036250Homologous_superfamilyAcyl-CoA dehydrogenase-like, C-terminalInterproscan
IPR009075DomainAcyl-CoA dehydrogenase/oxidase, C-terminalInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR000164FamilyHistone H3/CENP-AInterproscan
IPR007125DomainHistone H2A/H2B/H3Interproscan
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR001995DomainPeptidase A2A, retrovirus, catalyticInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45749-Interproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR13112UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEINInterproscan
PTHR23227BUCENTAUR RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR43831ISOBUTYRYL-COA DEHYDROGENASEInterproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR11426HISTONE H3Interproscan
PTHR37984PROTEIN CBG26694Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0000184Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0045727Biological Processpositive regulation of translationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0016627Molecular Functionoxidoreductase activity, acting on the CH-CH group of donorsInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0004190Molecular Functionaspartic-type endopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11253H3; histone H3-Exosomeko04147deepkoala

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