Detailed information of Aala_g1839.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_039259582.1, SCAN domain-containing protein 3-like [Styela clava]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O95789Zinc finger MYM-type protein 6 OS=Homo sapiens OX=9606 GN=ZMYM6 PE=1 SV=2
Q7XWP1Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0252200 PE=3 SV=2
Q9GZT4Serine racemase OS=Homo sapiens OX=9606 GN=SRR PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15511CENP-T_CCentromere kinetochore component CENP-T histone foldDomainInterproscan
PF00291PALPPyridoxal-phosphate dependent enzymeFamilyInterproscan
PF00629MAMMAM domain, meprin/A5/muDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF03178CPSF_ACPSF A subunit regionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001951FamilyHistone H4Interproscan
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR004823DomainTATA box binding protein associated factor (TAF), histone-like fold domainInterproscan
IPR035425DomainCENP-T/Histone H4, histone foldInterproscan
IPR019809Conserved_siteHistone H4, conserved siteInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR036052Homologous_superfamilyTryptophan synthase beta chain-like, PALP domain superfamilyInterproscan
IPR001926DomainTryptophan synthase beta chain-like, PALP domainInterproscan
IPR000998DomainMAM domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR051560FamilyMAM domain-containing proteinInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR004871DomainCleavage/polyadenylation specificity factor, A subunit, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11697GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEINInterproscan
PTHR10484HISTONE H4Interproscan
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR43050SERINE / THREONINE RACEMASE FAMILY MEMBERInterproscan
PTHR23159CENTROSOMAL PROTEIN 2Interproscan
PTHR23282APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.Interproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000287Molecular Functionmagnesium ion bindingInterproscan
GO:0003941Molecular FunctionL-serine ammonia-lyase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0018114Molecular Functionthreonine racemase activityInterproscan
GO:0030170Molecular Functionpyridoxal phosphate bindingInterproscan
GO:0030378Molecular Functionserine racemase activityInterproscan
GO:0070179Biological ProcessD-serine biosynthetic processInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11254H4; histone H4-Domain-containing proteins not elsewhere classifiedko04990deepkoala
Chromosome and associated proteinsko03036deepkoala

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