Detailed information of Aala_g1843.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAI0218070.1, hypothetical protein LSAT2_030180 [Lamellibrachia satsuma]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O00370LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1
P08548LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1
P11369LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF15511CENP-T_CCentromere kinetochore component CENP-T histone foldDomainInterproscan
PF03645Tctex-1Tctex-1 familyFamilyInterproscan
PF00780CNHCNH domainRepeatInterproscan
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF08148DSHCTDSHCT (NUC185) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR050687FamilyDynein Intermediate ChainInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001951FamilyHistone H4Interproscan
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR004823DomainTATA box binding protein associated factor (TAF), histone-like fold domainInterproscan
IPR035425DomainCENP-T/Histone H4, histone foldInterproscan
IPR019809Conserved_siteHistone H4, conserved siteInterproscan
IPR039181FamilyEIG121-likeInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR005334FamilyDynein light chain Tctex-1 likeInterproscan
IPR001180DomainCitron homology (CNH) domainInterproscan
IPR050839FamilyRho-associated Serine/Threonine KinaseInterproscan
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR012961DomainATP-dependent RNA helicase Ski2/MTR4, C-terminalInterproscan
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR12442DYNEIN INTERMEDIATE CHAINInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR10484HISTONE H4Interproscan
PTHR22727PROTEIN CBG13728Interproscan
PTHR48209AGL056WPInterproscan
PTHR22988MYOTONIC DYSTROPHY S/T KINASE-RELATEDInterproscan
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005868Cellular Componentcytoplasmic dynein complexInterproscan
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0010970Biological Processtransport along microtubuleInterproscan
GO:0045503Molecular Functiondynein light chain bindingInterproscan
GO:0045504Molecular Functiondynein heavy chain bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0016021Cellular ComponentmembraneInterproscan
GO:0004674Molecular Functionprotein serine/threonine kinase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005856Cellular ComponentcytoskeletonInterproscan
GO:0018107Biological Processpeptidyl-threonine phosphorylationInterproscan
GO:0031032Biological Processactomyosin structure organizationInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11254H4; histone H4-Exosomeko04147deepkoala
Viral proteinsko03200deepkoala
Chromosome and associated proteinsko03036deepkoala

TOP