Detailed information of Aala_g1845.t1 in Alatina alata

Genomic Location: :...
NR annotation: PWS22357.1, hypothetical protein DKP78_18815, partial [Enterococcus faecium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A5PJW8DNA-directed RNA polymerase II subunit RPB2 OS=Bos taurus OX=9913 GN=POLR2B PE=1 SV=1
P30876DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens OX=9606 GN=POLR2B PE=1 SV=1
Q8CFI7DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus OX=10090 GN=Polr2b PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00125HistoneCore histone H2A/H2B/H3/H4DomainInterproscan
PF16211Histone_H2A_CC-terminus of histone H2AFamilyInterproscan
PF04752ChaCChaC-like proteinFamilyInterproscan
PF07647SAM_2SAM domain (Sterile alpha motif)DomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF04561RNA_pol_Rpb2_2RNA polymerase Rpb2, domain 2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR007125DomainHistone H2A/H2B/H3Interproscan
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR032458Conserved_siteHistone H2A conserved siteInterproscan
IPR002119FamilyHistone H2AInterproscan
IPR032454DomainHistone H2A, C-terminal domainInterproscan
IPR006840FamilyGlutathione-specific gamma-glutamylcyclotransferaseInterproscan
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR001660DomainSterile alpha motif domainInterproscan
IPR013761Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR015712FamilyDNA-directed RNA polymerase, subunit 2Interproscan
IPR007642DomainRNA polymerase Rpb2, domain 2Interproscan
IPR035929Homologous_superfamilyCoaB-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23227BUCENTAUR RELATEDInterproscan
PTHR23430HISTONE H2AInterproscan
PTHR12192CATION TRANSPORT PROTEIN CHAC-RELATEDInterproscan
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2Interproscan
PTHR35383MUCIN 12EA-RELATEDInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0000790Cellular ComponentchromatinInterproscan
GO:0006342Biological Processheterochromatin formationInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0003839Molecular Functiongamma-glutamylcyclotransferase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006751Biological Processglutathione catabolic processInterproscan
GO:0061928Molecular Functionglutathione specific gamma-glutamylcyclotransferase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0001055Molecular FunctionRNA polymerase II activityInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0005665Cellular ComponentRNA polymerase II, core complexInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0032549Molecular Functionribonucleoside bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11251H2A; histone H2A-Glutathione metabolismko00480deepkoala
Exosomeko04147deepkoala

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