Gene detail

Detailed information of Aala_g1858.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAJ4944530.1, hypothetical protein JOQ06_013073, partial [Pogonophryne albipinna]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q6B8I0	Dual specificity protein phosphatase 13A OS=Mus musculus OX=10090 GN=Dusp13a PE=2 SV=1
Q9D700	Dual specificity protein phosphatase 26 OS=Mus musculus OX=10090 GN=Dusp26 PE=2 SV=2
Q5VZP5	Serine/threonine/tyrosine-interacting-like protein 2 OS=Homo sapiens OX=9606 GN=STYXL2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF00782	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan
PF00878	CIMR	Cation-independent mannose-6-phosphate receptor repeat	Family	Interproscan
PF03055	RPE65	Retinal pigment epithelial membrane protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR026630	Family	EPM2A-interacting protein 1/ZBED8-like	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR020422	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR000340	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR020405	Family	Atypical dual specificity phosphatase, subfamily A	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR044865	Domain	MRH domain	Interproscan
IPR009011	Homologous_superfamily	Mannose-6-phosphate receptor binding domain superfamily	Interproscan
IPR000479	Repeat	Cation-independent mannose-6-phosphate receptor repeat	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR004294	Family	Carotenoid oxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR45913	EPM2A-INTERACTING PROTEIN 1	Interproscan
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR45682	AGAP008228-PA	Interproscan
PTHR46880	RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR15071	MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER	Interproscan
PTHR33332	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR33198	ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR11697	GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN	Interproscan
PTHR10543	BETA-CAROTENE DIOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008138	Molecular Function	protein tyrosine/serine/threonine phosphatase activity	Interproscan
GO:0033549	Molecular Function	MAP kinase phosphatase activity	Interproscan
GO:0043409	Biological Process	negative regulation of MAPK cascade	Interproscan
GO:0005520	Molecular Function	insulin-like growth factor binding	Interproscan
GO:0005770	Cellular Component	late endosome	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007041	Biological Process	lysosomal transport	Interproscan
GO:0005537	Molecular Function	D-mannose binding	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003834	Molecular Function	beta-carotene 15,15'-dioxygenase activity	Interproscan
GO:0004744	Molecular Function	obsolete retinal isomerase activity	Interproscan
GO:0010436	Molecular Function	carotenoid dioxygenase activity	Interproscan
GO:0016121	Biological Process	carotene catabolic process	Interproscan
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24642	ZBED5_7_8_9, BUSTER; zinc finger BED domain-containing protein 5/7/8/9	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala