Detailed information of Aala_g1859.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_056125046.1, uncharacterized protein LOC130102931 [Rhinichthys klamathensis goyatoka]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P04323Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P20825Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q7TD08Enzymatic polyprotein OS=Cestrum yellow leaf curling virus OX=175814 GN=ORF V PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF13359DDE_Tnp_4DDE superfamily endonucleaseDomainInterproscan
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF02932Neur_chan_membNeurotransmitter-gated ion-channel transmembrane regionFamilyInterproscan
PF04371PAD_porphPorphyromonas-type peptidyl-arginine deiminaseFamilyInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR002156DomainRibonuclease H domainInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR027806DomainHarbinger transposase-derived nuclease domainInterproscan
IPR052717FamilyVacuolar processing and transposase activity regulatorsInterproscan
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR006029DomainNeurotransmitter-gated ion-channel transmembrane domainInterproscan
IPR036719Homologous_superfamilyNeurotransmitter-gated ion-channel transmembrane domain superfamilyInterproscan
IPR006201FamilyNeurotransmitter-gated ion-channelInterproscan
IPR038050Homologous_superfamilyNeuronal acetylcholine receptorInterproscan
IPR006028FamilyGamma-aminobutyric acid A receptor/Glycine receptor alphaInterproscan
IPR007466FamilyPeptidyl-arginine deiminase, Porphyromonas-typeInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR039598FamilyHMG domain-containing protein 3Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan
PTHR45749-Interproscan
PTHR22930UNCHARACTERIZEDInterproscan
PTHR46169DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM AInterproscan
PTHR18945NEUROTRANSMITTER GATED ION CHANNELInterproscan
PTHR31377AGMATINE DEIMINASE-RELATEDInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR17609HMG DOMAIN-CONTAINING PROTEIN 3Interproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0005231Molecular Functionexcitatory extracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0005254Molecular Functionchloride channel activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0007268Biological Processchemical synaptic transmissionInterproscan
GO:0030594Molecular Functionneurotransmitter receptor activityInterproscan
GO:0034220Biological Processmonoatomic ion transmembrane transportInterproscan
GO:0042391Biological Processregulation of membrane potentialInterproscan
GO:0043005Cellular Componentneuron projectionInterproscan
GO:0045202Cellular ComponentsynapseInterproscan
GO:0050877Biological Processnervous system processInterproscan
GO:1902476Biological Processchloride transmembrane transportInterproscan
GO:1904315Molecular Functiontransmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potentialInterproscan
GO:0004668Molecular Functionprotein-arginine deiminase activityInterproscan
GO:0009446Biological Processputrescine biosynthetic processInterproscan
GO:0047632Molecular Functionagmatine deiminase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K25228APC15, ANAPC15; anaphase-promoting complex subunit 15-Chromosome and associated proteinsko03036deepkoala

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