Detailed information of Aala_g187.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_027233923.1, uncharacterized protein LOC113825295 isoform X2 [Penaeus vannamei]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P48057Sodium- and chloride-dependent GABA transporter 1 OS=Mus cookii OX=10098 GN=Slc6a1 PE=1 SV=1
P30531Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens OX=9606 GN=SLC6A1 PE=1 SV=2
P31648Sodium- and chloride-dependent GABA transporter 1 OS=Mus musculus OX=10090 GN=Slc6a1 PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00209SNFSodium:neurotransmitter symporter familyFamilyInterproscan
PF13961DUF4219Domain of unknown function (DUF4219)DomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR024861FamilyDonsonInterproscan
IPR000175FamilySodium:neurotransmitter symporterInterproscan
IPR037272Homologous_superfamilySodium:neurotransmitter symporter superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR025314DomainDomain of unknown function DUF4219Interproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR051488FamilyWD repeat-containing striatinInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR12972DOWNSTREAM NEIGHBOR OF SONInterproscan
PTHR11616SODIUM/CHLORIDE DEPENDENT TRANSPORTERInterproscan
PTHR47481-Interproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR47526ATP-DEPENDENT DNA HELICASEInterproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan
PTHR32083CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATEDInterproscan
PTHR15653STRIATINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0033260Biological Processnuclear DNA replicationInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0035725Biological Processsodium ion transmembrane transportInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0005856Cellular ComponentcytoskeletonInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K22422DONSON; protein downstream neighbor of Son-DNA repair and recombination proteinsko03400deepkoala

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