Detailed information of Aala_g1877.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB4016427.1, Retrovirus-related Pol poly from transposon TNT 1-94 [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P04146Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3
P0CV72Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF02812ELFV_dehydrog_NGlu/Leu/Phe/Val dehydrogenase, dimerisation domainDomainInterproscan
PF13517FG-GAP_3FG-GAP-like repeatRepeatInterproscan
PF15251TAPR1-likeTelomere attrition and p53 response 1 protein-likeFamilyInterproscan
PF01549ShKShK domain-likeDomainInterproscan
PF01400AstacinAstacin (Peptidase family M12A)DomainInterproscan
PF13843DDE_Tnp_1_7Transposase IS4DomainInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF00665rveIntegrase core domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR006095FamilyGlutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenaseInterproscan
IPR006097DomainGlutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, dimerisation domainInterproscan
IPR016211FamilyGlutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, bacterial/archaealInterproscan
IPR046346Homologous_superfamilyAminoacid dehydrogenase-like, N-terminal domain superfamilyInterproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR013517RepeatFG-GAP repeatInterproscan
IPR028994Homologous_superfamilyIntegrin alpha, N-terminalInterproscan
IPR040099FamilyZinc finger ZZ-type and EF-hand domain-containing protein 1Interproscan
IPR040308FamilyHUWE1-associated protein modifying stress responsesInterproscan
IPR029196FamilyHUWE1-associated protein modifying stress responses-likeInterproscan
IPR003582DomainShKT domainInterproscan
IPR001506DomainPeptidase M12AInterproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR052638FamilyPiggyBac transposable element-derivedInterproscan
IPR029526DomainPiggyBac transposable element-derived proteinInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR42722LEUCINE DEHYDROGENASEInterproscan
PTHR22772NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEINInterproscan
PTHR31624UPF0472 PROTEIN C16ORF72Interproscan
PTHR10127DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAININGInterproscan
PTHR47055DDE_TNP_1_7 DOMAIN-CONTAINING PROTEINInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006520Biological Processamino acid metabolic processInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0016639Molecular Functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptorInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

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