Gene detail

Detailed information of Aala_g1887.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_046863105.1, craniofacial development protein 2-like [Xenia sp. Carnegie-2017]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P21328	RNA-directed DNA polymerase from mobile element jockey OS=Drosophila melanogaster OX=7227 GN=pol PE=1 SV=1
Q95SX7	Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
P21329	RNA-directed DNA polymerase from mobile element jockey OS=Drosophila funebris OX=7221 GN=jockeypol PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF02138	Beach	Beige/BEACH domain	Family	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF18658	zf-C2H2_12	Spin-doc zinc-finger	Domain	Interproscan
PF00431	CUB	CUB domain	Domain	Interproscan
PF00621	RhoGEF	RhoGEF domain	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000409	Domain	BEACH domain	Interproscan
IPR036372	Homologous_superfamily	BEACH domain superfamily	Interproscan
IPR050865	Family	BEACH Domain-Containing	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR040647	Domain	SPIN-DOC-like, zinc-finger	Interproscan
IPR000859	Domain	CUB domain	Interproscan
IPR035914	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR011106	Domain	Seven cysteines, N-terminal	Interproscan
IPR029865	Family	Dyslexia-associated protein KIAA0319-like	Interproscan
IPR052717	Family	Vacuolar processing and transposase activity regulators	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR052805	Family	GEF and Ubiquitin-Proteasome Regulators	Interproscan
IPR000219	Domain	Dbl homology (DH) domain	Interproscan
IPR035899	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR027124	Family	SWR1-complex protein 5/Craniofacial development protein 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33332	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR13743	BEIGE/BEACH-RELATED	Interproscan
PTHR46238	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR46182	FI19480P1	Interproscan
PTHR46169	DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A	Interproscan
PTHR47272	DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46857	EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR23227	BUCENTAUR RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001764	Biological Process	neuron migration	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0031410	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13784	PTMA; prothymosin alpha	-	Others	-	deepkoala