Gene detail

Detailed information of Aala_g1904.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_027036443.1, protocadherin Fat 1-like [Pocillopora damicornis]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q8BNA6	Protocadherin Fat 3 OS=Mus musculus OX=10090 GN=Fat3 PE=1 SV=2
Q8R508	Protocadherin Fat 3 OS=Rattus norvegicus OX=10116 GN=Fat3 PE=1 SV=1
Q14517	Protocadherin Fat 1 OS=Homo sapiens OX=9606 GN=FAT1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14214	Helitron_like_N	Helitron helicase-like domain at N-terminus	Family	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF16206	Mon2_C	C-terminal region of Mon2 protein	Family	Interproscan
PF04675	DNA_ligase_A_N	DNA ligase N terminus	Family	Interproscan
PF00927	Transglut_C	Transglutaminase family, C-terminal ig like domain	Domain	Interproscan
PF03564	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025476	Domain	Helitron helicase-like domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR002126	Domain	Cadherin-like	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR032817	Domain	Mon2, C-terminal	Interproscan
IPR036599	Homologous_superfamily	DNA ligase, ATP-dependent, N-terminal domain superfamily	Interproscan
IPR050191	Family	ATP-dependent DNA ligase	Interproscan
IPR012308	Domain	DNA ligase, ATP-dependent, N-terminal	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036238	Homologous_superfamily	Transglutaminase, C-terminal domain superfamily	Interproscan
IPR050779	Family	Protein-glutamine gamma-glutamyltransferases	Interproscan
IPR008958	Domain	Transglutaminase, C-terminal	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR005312	Family	Protein of unknown function DUF1759	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000366	Family	GPCR fungal pheromone mating factor, STE2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45786	DNA BINDING PROTEIN-LIKE	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24026	FAT ATYPICAL CADHERIN-RELATED	Interproscan
PTHR45674	DNA LIGASE 1/3 FAMILY MEMBER	Interproscan
PTHR11590	PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE	Interproscan
PTHR47331	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR13491	ZCCHC10 PROTEIN	Interproscan
PTHR33244	INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003910	Molecular Function	DNA ligase (ATP) activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006266	Biological Process	DNA ligation	Interproscan
GO:0006273	Biological Process	lagging strand elongation	Interproscan
GO:1903461	Biological Process	Okazaki fragment processing involved in mitotic DNA replication	Interproscan
GO:0003810	Molecular Function	protein-glutamine gamma-glutamyltransferase activity	Interproscan
GO:0018149	Biological Process	peptide cross-linking	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0004932	Molecular Function	mating-type factor pheromone receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26670	RdRp; Mitoviridae RNA-directed RNA polymerase	-	Viral proteins	-	deepkoala