Detailed information of Aala_g1925.t1 in Alatina alata

Genomic Location: :...
NR annotation: MCG8112906.1, IS630 family transposase [Candidatus Thiodiazotropha endolucinida]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P20825Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q7LHG5Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2
Q99315Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13936HTH_38Helix-turn-helix domainDomainInterproscan
PF01498HTH_Tnp_Tc3_2TransposaseFamilyInterproscan
PF13358DDE_3DDE superfamily endonucleaseDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF02210Laminin_G_2Laminin G domainDomainInterproscan
PF21373ZNHIT3_CZinc finger HIT domain-containing protein 3, C-terminal domainDomainInterproscan
PF21108MDN1_4thMidasin AAA+ ATPase lid domainDomainInterproscan
PF07728AAA_5AAA domain (dynein-related subfamily)DomainInterproscan
PF13843DDE_Tnp_1_7Transposase IS4DomainInterproscan
PF04006Mpp10Mpp10 proteinFamilyInterproscan
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF00643zf-B_boxB-box zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR052338FamilyTransposase_5Interproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR025246DomainTransposase IS30-like HTH domainInterproscan
IPR002492DomainTransposase, Tc1-likeInterproscan
IPR038717DomainTc1-like transposase, DDE domainInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR037696FamilyCoiled-coil domain-containing protein 77Interproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR053134FamilyRNA-directed DNA polymerase homologInterproscan
IPR050372FamilyNeurexin-related cell adhesion and synaptic proteinInterproscan
IPR001791DomainLaminin G domainInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR048371DomainZinc finger HIT domain-containing protein 3, C-terminal domainInterproscan
IPR048617DomainMidasin, lid domain 4Interproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR011704DomainATPase, dynein-related, AAA domainInterproscan
IPR029526DomainPiggyBac transposable element-derived proteinInterproscan
IPR012173FamilyU3 small nucleolar ribonucleoprotein complex, subunit Mpp10Interproscan
IPR000315DomainB-box-type zinc fingerInterproscan
IPR047153FamilyTRIM45/56/19Interproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23022TRANSPOSABLE ELEMENT-RELATEDInterproscan
PTHR22091UNCHARACTERIZEDInterproscan
PTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINInterproscan
PTHR21301REVERSE TRANSCRIPTASEInterproscan
PTHR15036PIKACHURIN-LIKE PROTEINInterproscan
PTHR48103MIDASIN-RELATEDInterproscan
PTHR46599PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4Interproscan
PTHR17039U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10Interproscan
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR25462BONUS, ISOFORM C-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006313Biological ProcessDNA transpositionInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0005813Cellular ComponentcentrosomeInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000027Biological Processribosomal large subunit assemblyInterproscan
GO:0000055Biological Processribosomal large subunit export from nucleusInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0030687Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0005732Cellular Componentsno(s)RNA-containing ribonucleoprotein complexInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan
GO:0034457Cellular ComponentMpp10 complexInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan

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