Detailed information of Aala_g199.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_006825770.1, PREDICTED: vam6/Vps39-like protein-like [Saccoglossus kowalevskii]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8R5L3Vam6/Vps39-like protein OS=Mus musculus OX=10090 GN=Vps39 PE=1 SV=1
Q96JC1Vam6/Vps39-like protein OS=Homo sapiens OX=9606 GN=VPS39 PE=1 SV=2
Q16960Dynein intermediate chain 3, ciliary OS=Heliocidaris crassispina OX=1043166 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00025ArfADP-ribosylation factor familyDomainInterproscan
PF03564DUF1759Protein of unknown function (DUF1759)FamilyInterproscan
PF07247AATaseAlcohol acetyltransferaseFamilyInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan
PF13499EF-hand_7EF-hand domain pairDomainInterproscan
PF03133TTLTubulin-tyrosine ligase familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR024156FamilySmall GTPase superfamily, ARF typeInterproscan
IPR005225DomainSmall GTP-binding protein domainInterproscan
IPR006689FamilySmall GTPase superfamily, ARF/SAR typeInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR005312FamilyProtein of unknown function DUF1759Interproscan
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR032914FamilyVam6/VPS39/TRAP1 familyInterproscan
IPR023213Homologous_superfamilyChloramphenicol acetyltransferase-like domain superfamilyInterproscan
IPR052058FamilyAlcohol O-acetyltransferase-related proteinInterproscan
IPR010828FamilyAlcohol acetyltransferase/N-acetyltransferaseInterproscan
IPR050687FamilyDynein Intermediate ChainInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR052510FamilyOomycete RxLR EffectorInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR004344FamilyTubulin-tyrosine ligase/Tubulin polyglutamylaseInterproscan
IPR027749FamilyTubulin--tyrosine ligase-like protein 12Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11711ADP RIBOSYLATION FACTOR-RELATEDInterproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR12894CNH DOMAIN CONTAININGInterproscan
PTHR28037ALCOHOL O-ACETYLTRANSFERASE 1-RELATEDInterproscan
PTHR12442DYNEIN INTERMEDIATE CHAINInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR46088TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0006914Biological ProcessautophagyInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0034058Biological Processendosomal vesicle fusionInterproscan
GO:0003341Biological Processcilium movementInterproscan
GO:0007018Biological Processmicrotubule-based movementInterproscan
GO:0036157Cellular Componentouter dynein armInterproscan
GO:0036158Biological Processouter dynein arm assemblyInterproscan
GO:0045503Molecular Functiondynein light chain bindingInterproscan
GO:0045504Molecular Functiondynein heavy chain bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0036211Biological Processprotein modification processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K17804TIM44; mitochondrial import inner membrane translocase subunit TIM44-Viral proteinsko03200deepkoala
Transportersko02000deepkoala

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