Detailed information of Aala_g1992.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_045554111.1, semaphorin-5B isoform X2 [Salmo salar]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9P283Semaphorin-5B OS=Homo sapiens OX=9606 GN=SEMA5B PE=1 SV=4
Q60519Semaphorin-5B OS=Mus musculus OX=10090 GN=Sema5b PE=2 SV=2
P15927Replication protein A 32 kDa subunit OS=Homo sapiens OX=9606 GN=RPA2 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08784RPA_CReplication protein A C terminalDomainInterproscan
PF14291DUF4371Domain of unknown function (DUF4371)FamilyInterproscan
PF07247AATaseAlcohol acetyltransferaseFamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF01437PSIPlexin repeatFamilyInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF00028CadherinCadherin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR040260FamilyReplication factor A protein-likeInterproscan
IPR014646FamilyReplication factor A protein 2Interproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR014892DomainReplication protein A, C-terminalInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR025398DomainDomain of unknown function DUF4371Interproscan
IPR006580DomainZinc finger, TTF-typeInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR023213Homologous_superfamilyChloramphenicol acetyltransferase-like domain superfamilyInterproscan
IPR052058FamilyAlcohol O-acetyltransferase-related proteinInterproscan
IPR010828FamilyAlcohol acetyltransferase/N-acetyltransferaseInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR027231FamilySemaphorinInterproscan
IPR002165RepeatPlexin repeatInterproscan
IPR052510FamilyOomycete RxLR EffectorInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR020894Conserved_siteCadherin conserved siteInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13989REPLICATION PROTEIN A-RELATEDInterproscan
PTHR45749-Interproscan
PTHR28037ALCOHOL O-ACETYLTRANSFERASE 1-RELATEDInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR11036SEMAPHORINInterproscan
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR24026FAT ATYPICAL CADHERIN-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000724Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0000781Cellular Componentchromosome, telomeric regionInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0005662Cellular ComponentDNA replication factor A complexInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan
GO:0006289Biological Processnucleotide-excision repairInterproscan
GO:0035861Cellular Componentsite of double-strand breakInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006310Biological ProcessDNA recombinationInterproscan
GO:0001755Biological Processneural crest cell migrationInterproscan
GO:0007411Biological Processaxon guidanceInterproscan
GO:0030215Molecular Functionsemaphorin receptor bindingInterproscan
GO:0030335Biological Processpositive regulation of cell migrationInterproscan
GO:0045499Molecular Functionchemorepellent activityInterproscan
GO:0048843Biological Processnegative regulation of axon extension involved in axon guidanceInterproscan
GO:0071526Biological Processsemaphorin-plexin signaling pathwayInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10739RFA2, RPA2; replication factor A2-DNA repair and recombination proteinsko03400deepkoala

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