Detailed information of Aala_g20.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB4035006.1, Retrovirus-related Pol poly from transposon TNT 1-94 [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5ZMN2DNA replication licensing factor MCM3 OS=Gallus gallus OX=9031 GN=MCM3 PE=2 SV=1
P49739Maternal DNA replication licensing factor mcm3 OS=Xenopus laevis OX=8355 GN=mmcm3 PE=1 SV=2
Q32NU8Outer dynein arm-docking complex subunit 4 OS=Xenopus laevis OX=8355 GN=odad4 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13843DDE_Tnp_1_7Transposase IS4DomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan
PF07719TPR_2Tetratricopeptide repeatRepeatInterproscan
PF13181TPR_8Tetratricopeptide repeatRepeatInterproscan
PF17120zf-RING_16RING/Ubox like zinc-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052638FamilyPiggyBac transposable element-derivedInterproscan
IPR029526DomainPiggyBac transposable element-derived proteinInterproscan
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR040111FamilyOuter dynein arm-docking complex subunit 4Interproscan
IPR019734RepeatTetratricopeptide repeatInterproscan
IPR013105RepeatTetratricopeptide repeat 2Interproscan
IPR037590FamilyGATOR2 complex protein WDR24Interproscan
IPR049566DomainWDR59/RTC1-like, RING zinc finger domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47055DDE_TNP_1_7 DOMAIN-CONTAINING PROTEINInterproscan
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR23040UNCHARACTERIZEDInterproscan
PTHR46200GATOR COMPLEX PROTEIN WDR24Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005774Cellular Componentvacuolar membraneInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0016239Biological Processpositive regulation of macroautophagyInterproscan
GO:0032008Biological Processpositive regulation of TOR signalingInterproscan
GO:0034198Biological Processcellular response to amino acid starvationInterproscan
GO:0061700Cellular ComponentGATOR2 complexInterproscan
GO:1904263Biological Processpositive regulation of TORC1 signalingInterproscan

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