Gene detail

Detailed information of Aala_g2028.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_033932818.1, cell division cycle protein 27 homolog [Pseudochaenichthys georgianus]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
P30260	Cell division cycle protein 27 homolog OS=Homo sapiens OX=9606 GN=CDC27 PE=1 SV=2
Q4V8A2	Cell division cycle protein 27 homolog OS=Rattus norvegicus OX=10116 GN=Cdc27 PE=2 SV=1
A7Z061	Cell division cycle protein 27 homolog OS=Bos taurus OX=9913 GN=CDC27 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD
Ubiquitin Family	E3\|E3 activity\|RBR

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08326	ACC_central	Acetyl-CoA carboxylase, central region	Family	Interproscan
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF00755	Carn_acyltransf	Choline/Carnitine o-acyltransferase	Family	Interproscan
PF07648	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF01485	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan
PF18091	E3_UbLigase_RBR	E3 Ubiquitin Ligase RBR C-terminal domain	Domain	Interproscan
PF03456	uDENN	uDENN domain	Domain	Interproscan
PF02141	DENN	DENN (AEX-3) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013537	Domain	Acetyl-CoA carboxylase, central domain	Interproscan
IPR049076	Family	Acetyl-CoA carboxylase	Interproscan
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR000542	Family	Acyltransferase ChoActase/COT/CPT	Interproscan
IPR042231	Homologous_superfamily	Choline/Carnitine o-acyltransferase, domain 2	Interproscan
IPR023213	Homologous_superfamily	Chloramphenicol acetyltransferase-like domain superfamily	Interproscan
IPR039551	Domain	Choline/carnitine acyltransferase domain	Interproscan
IPR007149	Family	Leo1-like protein	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR052229	Family	Collagen VI and Biomineralization Protein PIF	Interproscan
IPR002350	Domain	Kazal domain	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR036058	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR026254	Family	E3 ubiquitin-protein ligase RNF31-like	Interproscan
IPR002867	Domain	IBR domain	Interproscan
IPR041031	Domain	RNF31, C-terminal	Interproscan
IPR044066	Domain	TRIAD supradomain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR001194	Domain	cDENN domain	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR037516	Domain	Tripartite DENN domain	Interproscan
IPR051696	Family	DENN Domain-Containing GEFs	Interproscan
IPR005113	Domain	uDENN domain	Interproscan
IPR043153	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45728	ACETYL-COA CARBOXYLASE, ISOFORM A	Interproscan
PTHR47272	DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR22589	CARNITINE O-ACYLTRANSFERASE	Interproscan
PTHR23146	LEO1 PROTEIN	Interproscan
PTHR22588	UNCHARACTERIZED	Interproscan
PTHR16004	RING FINGER PROTEIN 31-RELATED	Interproscan
PTHR33395	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan
PTHR12296	DENN DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003989	Molecular Function	acetyl-CoA carboxylase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006633	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0016746	Molecular Function	acyltransferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:0032968	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:1990269	Molecular Function	RNA polymerase II C-terminal domain phosphoserine binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0036435	Molecular Function	K48-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070530	Molecular Function	K63-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:0071797	Cellular Component	LUBAC complex	Interproscan
GO:0097039	Biological Process	protein linear polyubiquitination	Interproscan
GO:1990450	Molecular Function	linear polyubiquitin binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0031410	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032483	Biological Process	regulation of Rab protein signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20162	DENND3; DENN domain-containing protein 3	-	Membrane trafficking	ko04131	deepkoala