Gene detail

Detailed information of Aala_g2034.t1 in Alatina alata

Genomic Location: :...
NR annotation: MCP3891066.1, DDE-type integrase/transposase/recombinase [Desulfobulbaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P03364	Gag-Pro-Pol polyprotein OS=Squirrel monkey retrovirus OX=11856 GN=pol PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01825	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF19311	KELAA	KELAA motif	Motif	Interproscan
PF19314	DUF5917	Family of unknown function (DUF5917)	Family	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000203	Conserved_site	GPS motif	Interproscan
IPR046338	Homologous_superfamily	GAIN domain superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR052203	Family	GHMP Kinase-Related Enzymes	Interproscan
IPR001174	Family	Galactokinase/homoserine kinase	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR002052	Conserved_site	DNA methylase, N-6 adenine-specific, conserved site	Interproscan
IPR045668	Conserved_site	FHF complex subunit HOOK-interacting protein, KELAA motif	Interproscan
IPR045669	Domain	FHF complex subunit HOOK-interacting protein, C-terminal	Interproscan
IPR019384	Family	FHF complex subunit HOOK interacting protein	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR036705	Homologous_superfamily	ADP-ribosylation/Crystallin J1 superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45623	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED	Interproscan
PTHR33332	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR32463	L-FUCOSE KINASE	Interproscan
PTHR37984	PROTEIN CBG26694	Interproscan
PTHR21705	RAI16 PROTEIN-RELATED	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000785	Cellular Component	chromatin	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0034728	Biological Process	nucleosome organization	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0042352	Biological Process	GDP-L-fucose salvage	Interproscan
GO:0050201	Molecular Function	fucokinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016301	Molecular Function	kinase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0032259	Biological Process	methylation	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan