Detailed information of Aala_g2040.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB4025406.1, Usher syndrome type-1G, partial [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q495M9pre-mRNA splicing regulator USH1G OS=Homo sapiens OX=9606 GN=USH1G PE=1 SV=1
Q80T11pre-mRNA splicing regulator USH1G OS=Mus musculus OX=10090 GN=Ush1g PE=1 SV=1
Q8N8V4Ankyrin repeat and SAM domain-containing protein 4B OS=Homo sapiens OX=9606 GN=ANKS4B PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyETS

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13637Ank_4Ankyrin repeats (many copies)RepeatInterproscan
PF00536SAM_1SAM domain (Sterile alpha motif)DomainInterproscan
PF00640PIDPhosphotyrosine interaction domain (PTB/PID)DomainInterproscan
PF13499EF-hand_7EF-hand domain pairDomainInterproscan
PF00178EtsEts-domainDomainInterproscan
PF06839zf-GRFGRF zinc fingerDomainInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF03564DUF1759Protein of unknown function (DUF1759)FamilyInterproscan
PF13650Asp_protease_2Aspartyl proteaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050776FamilyAnkyrin Repeat and Cyclin-Dependent Kinase InhibitorInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR001660DomainSterile alpha motif domainInterproscan
IPR013761Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR006020DomainPTB/PI domainInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR000418DomainEts domainInterproscan
IPR046328FamilyETS familyInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR026630FamilyEPM2A-interacting protein 1/ZBED8-likeInterproscan
IPR010666DomainZinc finger, GRF-typeInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan
IPR052510FamilyOomycete RxLR EffectorInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR005312FamilyProtein of unknown function DUF1759Interproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24201ANK_REP_REGION DOMAIN-CONTAINING PROTEINInterproscan
PTHR11849ETSInterproscan
PTHR45913EPM2A-INTERACTING PROTEIN 1Interproscan
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K21878USH1G; Usher syndrome type-1G protein-Cilium and associated proteinsko03037deepkoala

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