Detailed information of Aala_g2052.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB4037530.1, retrovirus-related Pol poly from transposon TNT 1-94, partial [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P10978Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P14381Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1
Q8C8M1SIN3-HDAC complex-associated factor OS=Mus musculus OX=10090 GN=Sinhcaf PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03564DUF1759Protein of unknown function (DUF1759)FamilyInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF13976gag_pre-integrsGAG-pre-integrase domainDomainInterproscan
PF14244Retrotran_gag_3gag-polypeptide of LTR copia-typeFamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF04636PA26PA26 p53-induced protein (sestrin)FamilyInterproscan
PF15396FAM60AProtein Family FAM60AFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005312FamilyProtein of unknown function DUF1759Interproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR025724DomainGAG-pre-integrase domainInterproscan
IPR029472DomainRetrotransposon Copia-like, N-terminalInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR006730FamilySestrinInterproscan
IPR026065FamilySIN3-HDAC complex-associated factorInterproscan
IPR011527DomainABC transporter type 1, transmembrane domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR42648TRANSPOSASE, PUTATIVE-RELATEDInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR12474P53 REGULATED PA26 NUCLEAR PROTEIN SESTRINInterproscan
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:1901031Biological Processregulation of response to reactive oxygen speciesInterproscan
GO:0016239Biological Processpositive regulation of macroautophagyInterproscan
GO:0016684Molecular Functionoxidoreductase activity, acting on peroxide as acceptorInterproscan
GO:0070728Molecular FunctionL-leucine bindingInterproscan
GO:0071233Biological Processcellular response to L-leucineInterproscan
GO:1904262Biological Processnegative regulation of TORC1 signalingInterproscan
GO:1990253Biological Processcellular response to leucine starvationInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0140359Molecular FunctionABC-type transporter activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02983RP-S30e, RPS30; small subunit ribosomal protein S30e-Ubiquitin systemko04121deepkoala

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