Gene detail

Detailed information of Aala_g2059.t1 in Alatina alata

Genomic Location: :...
NR annotation: GFR64660.1, LINE-1 retrotransposable element ORF2 protein [Elysia marginata]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
P04146	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3
P0CV72	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|CUE

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07898	DUF1676	Protein of unknown function (DUF1676)	Family	Interproscan
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF07727	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF02845	CUE	CUE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR012464	Family	Protein of unknown function DUF1676	Interproscan
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR052638	Family	PiggyBac transposable element-derived	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052510	Family	Oomycete RxLR Effector	Interproscan
IPR013103	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR003892	Domain	Ubiquitin system component CUE	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46238	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR47055	DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR45895	INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR19446	REVERSE TRANSCRIPTASES	Interproscan
PTHR16461	TOLL-INTERACTING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031624	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan