Detailed information of Aala_g206.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB4037530.1, retrovirus-related Pol poly from transposon TNT 1-94, partial [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
B2GUS6Lysine-specific demethylase 8 OS=Xenopus tropicalis OX=8364 GN=kdm8 PE=2 SV=1
O14802DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens OX=9606 GN=POLR3A PE=1 SV=2
Q5ZL98DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus OX=9031 GN=POLR3A PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13621Cupin_8Cupin-like domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00623RNA_pol_Rpb1_2RNA polymerase Rpb1, domain 2DomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF14223Retrotran_gag_2gag-polypeptide of LTR copia-typeFamilyInterproscan
PF07677A2M_recepA-macroglobulin receptor binding domainDomainInterproscan
PF13843DDE_Tnp_1_7Transposase IS4DomainInterproscan
PF04124Dor1Dor1-like family RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003347DomainJmjC domainInterproscan
IPR050910FamilyJMJD6 family arginine demethylases/lysyl-hydroxylasesInterproscan
IPR041667DomainCupin-like domain 8Interproscan
IPR005819FamilyLinker histone H1/H5Interproscan
IPR001734FamilySodium/solute symporterInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR045867FamilyDNA-directed RNA polymerase, subunit beta-primeInterproscan
IPR000722DomainRNA polymerase, alpha subunitInterproscan
IPR006592DomainRNA polymerase, N-terminalInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR051068FamilyMajor Facilitator Superfamily Domain-Containing ProteinInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR036595Homologous_superfamilyAlpha-macroglobulin, receptor-binding domain superfamilyInterproscan
IPR009048DomainAlpha-macroglobulin, receptor-bindingInterproscan
IPR029526DomainPiggyBac transposable element-derived proteinInterproscan
IPR007255FamilyConserved oligomeric Golgi complex subunit 8Interproscan
IPR016159Homologous_superfamilyCullin repeat-like-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12480ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJDInterproscan
PTHR19376DNA-DIRECTED RNA POLYMERASEInterproscan
PTHR23510INNER MEMBRANE TRANSPORT PROTEIN YAJRInterproscan
PTHR46704CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan
PTHR47272DDE_TNP_1_7 DOMAIN-CONTAINING PROTEINInterproscan
PTHR21311CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0016706Molecular Function2-oxoglutarate-dependent dioxygenase activityInterproscan
GO:0018126Biological Processprotein hydroxylationInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0045905Biological Processpositive regulation of translational terminationInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006334Biological Processnucleosome assemblyInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0001056Molecular FunctionRNA polymerase III activityInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0005666Cellular ComponentRNA polymerase III complexInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0017119Cellular ComponentGolgi transport complexInterproscan
GO:0006891Biological Processintra-Golgi vesicle-mediated transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01022CHST1; keratan sulfate 6-sulfotransferase 1EC:2.8.2.21
Glycosyltransferasesko01003deepkoala

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