Detailed information of Aala_g2070.t1 in Alatina alata

Genomic Location: :...
NR annotation: KAI2660383.1, Transposon Ty3-G Gag-Pol polyprotein [Labeo rohita]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P20825Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q8I7P9Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
Q8R060Protein zwilch homolog OS=Mus musculus OX=10090 GN=Zwilch PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF09817ZwilchRZZ complex, subunit zwilchFamilyInterproscan
PF18408zf_HakaiC2H2 Hakai zinc finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR018630FamilyRZZ complex, subunit ZwilchInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR052752FamilyNACHT and WD repeat domain-containing proteinInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR041042DomainHakai, C2H2 zinc finger domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR040383FamilyE3 ubiquitin-protein ligase HAKAI/CBLL2Interproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR040380DomainHAKAI-like, RING finger, HC subclassInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR011029Homologous_superfamilyDeath-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan
PTHR15995PROTEIN ZWILCH HOMOLOGInterproscan
PTHR19871BETA TRANSDUCIN-RELATED PROTEINInterproscan
PTHR13480E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATEDInterproscan
PTHR35450REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR46704CXC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0007093Biological Processmitotic cell cycle checkpoint signalingInterproscan
GO:0007094Biological Processmitotic spindle assembly checkpoint signalingInterproscan
GO:0034501Biological Processprotein localization to kinetochoreInterproscan
GO:1990423Cellular ComponentRZZ complexInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0030155Biological Processregulation of cell adhesionInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15685CBLL1; E3 ubiquitin-protein ligase HakaiEC:2.3.2.27
Chromosome and associated proteinsko03036deepkoala
Ubiquitin systemko04121deepkoala

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