Detailed information of Aala_g2081.t1 in Alatina alata

Genomic Location: :...
NR annotation: CAB4007295.1, RNA-directed DNA polymerase from transposon X-element [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q7LHG5Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2
Q99315Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3
P0CT41Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1
Gene familySubfamily
Ubiquitin FamilyDUB|OTU|OTU

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05585DUF1758Putative peptidase (DUF1758)FamilyInterproscan
PF12762DDE_Tnp_IS1595ISXO2-like transposase domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF21530Pif1_2B_domDNA helicase Pif1, 2B domainDomainInterproscan
PF05970PIF1PIF1-like helicaseFamilyInterproscan
PF10275Peptidase_C65Peptidase C65 OtubainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001969Active_siteAspartic peptidase, active siteInterproscan
IPR008737DomainPeptidase aspartic, putativeInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR024445DomainISXO2-like transposase domainInterproscan
IPR053164FamilyIS1016-like transposaseInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR049163DomainDNA helicase Pif1-like, 2B domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR010285FamilyDNA helicase Pif1-likeInterproscan
IPR042468Homologous_superfamilyPeptidase C65, otubain, subdomain 1Interproscan
IPR042467Homologous_superfamilyPeptidase C65, otubain, subdomain 2Interproscan
IPR019400FamilyPeptidase C65, otubainInterproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR016615FamilyUbiquitin thioesterase OtubainInterproscan
IPR003323DomainOTU domainInterproscan
IPR052560FamilyRNA-directed DNA polymerase, mobile elementInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22955RETROTRANSPOSONInterproscan
PTHR47163DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEINInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR10492UNCHARACTERIZEDInterproscan
PTHR12931UBIQUITIN THIOLESTERASE PROTEIN OTUBInterproscan
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR36688ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004190Molecular Functionaspartic-type endopeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0000723Biological Processtelomere maintenanceInterproscan
GO:0003678Molecular FunctionDNA helicase activityInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0004843Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0043130Molecular Functionubiquitin bindingInterproscan
GO:0071108Biological Processprotein K48-linked deubiquitinationInterproscan
GO:0016579Biological Processprotein deubiquitinationInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09602OTUB1; ubiquitin thioesterase protein OTUB1EC:3.4.19.12
Ubiquitin systemko04121deepkoala

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