Gene detail

Detailed information of Aala_g2092.t1 in Alatina alata

Genomic Location: :...
NR annotation: XP_031566165.1, probable 4-coumarate--CoA ligase 3 [Actinia tenebrosa]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q54P77	Probable 4-coumarate--CoA ligase 1 OS=Dictyostelium discoideum OX=44689 GN=4cl1 PE=3 SV=1
Q54P79	Probable 4-coumarate--CoA ligase 3 OS=Dictyostelium discoideum OX=44689 GN=4cl3 PE=3 SV=2
P14912	4-coumarate--CoA ligase 1 OS=Petroselinum crispum OX=4043 GN=4CL1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF13193	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF00501	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF07727	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000515	Domain	ABC transporter type 1, transmembrane domain MetI-like	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR052560	Family	RNA-directed DNA polymerase, mobile element	Interproscan
IPR025110	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR045851	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR000873	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR020845	Conserved_site	AMP-binding, conserved site	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052510	Family	Oomycete RxLR Effector	Interproscan
IPR013103	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21301	REVERSE TRANSCRIPTASE	Interproscan
PTHR36688	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24096	LONG-CHAIN-FATTY-ACID--COA LIGASE	Interproscan
PTHR45895	INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR14149	RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF	Interproscan
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0016405	Molecular Function	CoA-ligase activity	Interproscan
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005516	Molecular Function	calmodulin binding	Interproscan
GO:0005938	Cellular Component	cell cortex	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:1903479	Biological Process	mitotic actomyosin contractile ring assembly actin filament organization	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08609	ADAM20; disintegrin and metalloproteinase domain-containing protein 20	EC:3.4.24.-	Phenylpropanoid biosynthesis	ko00940	deepkoala
K08609		EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala